STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSPOR_10940DNA-directed rna polymerase i, ii, and iii subunit rpabc4. (72 aa)    
Predicted Functional Partners:
FSPOR_5324
DNA-directed rna polymerase and iii subunit rpabc5.
   
 0.999
FSPOR_9538
DNA-directed rna polymerase ii subunit rpb11.
   
 0.998
FSPOR_688
DNA-directed rna polymerases i.
   
 0.998
FSPOR_11140
DNA-directed rna polymerase i, ii, and iii subunit rpabc1.
   
 0.997
FSPOR_10643
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.997
FSPOR_6610
DNA-directed rna polymerase i and iii subunit rpac2.
   
 0.997
FSPOR_4021
DNA-directed rna polymerase i and iii subunit rpac1.
   
 0.997
FSPOR_3263
DNA-directed rna polymerase ii subunit rpb9.
   
 0.997
FSPOR_2596
DNA-directed rna polymerase iii subunit rpc8.
   
 0.997
FSPOR_10882
DNA-directed rna polymerase ii subunit rpb7.
    
 0.996
Your Current Organism:
Fusarium sporotrichioides
NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides
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