STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSPOR_5308ATP-dependent rna helicase rok1. (693 aa)    
Predicted Functional Partners:
FSPOR_3835
Sas10 domain-containing protein.
   
 0.996
FSPOR_5440
U3 small nucleolar RNA-associated protein 22.
   
 0.989
FSPOR_7418
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.986
FSPOR_8841
Uncharacterized protein.
   
 0.982
FSPOR_8427
Nop14-nuclear and nucleolar with possible role in ribosome biogenesis.
   
 
 0.965
FSPOR_9684
Antigen lsa-1.
   
 0.962
FSPOR_3570
ATP-dependent rna helicase mak5; Belongs to the DEAD box helicase family.
  
0.960
FSPOR_10196
Rrna-processing protein utp23.
   
 0.957
FSPOR_2360
Putative ecm16-deah-box rna helicase.
   
 0.957
FSPOR_11147
ATP-dependent rna helicase dbp7; Belongs to the DEAD box helicase family.
  
0.956
Your Current Organism:
Fusarium sporotrichioides
NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides
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