STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSPOR_4724Rhamnogalacturonate lyase c. (662 aa)    
Predicted Functional Partners:
FSPOR_40
Pre-mrna-splicing factor clf-1.
   
 0.969
FSPOR_10632
Pre-mrna-splicing factor syf1.
   
 0.964
FSPOR_11595
RRM domain-containing protein.
   
 0.959
FSPOR_6612
Cell cycle control cwf14.
    
 0.959
FSPOR_5585
Pre-mrna-splicing factor isy-1.
    
 0.953
FSPOR_11779
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.944
FSPOR_8650
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
  0.943
FSPOR_10966
Peptidylprolyl isomerase.
   
 0.934
FSPOR_7630
Pre-mrna-splicing factor cef-1.
   
 
 0.930
FSPOR_11444
Pre-mrna-splicing factor cwc22.
   
 
 0.926
Your Current Organism:
Fusarium sporotrichioides
NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides
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