STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSPOR_4066Basic proline-rich. (341 aa)    
Predicted Functional Partners:
FSPOR_3770
Nuclear cap-binding protein subunit 2.
    
 0.709
FSPOR_9291
Uncharacterized protein.
    
 0.706
FSPOR_9665
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.701
FSPOR_9514
Eukaryotic translation initiation factor 2 subunit gamma.
   
 0.692
FSPOR_7411
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.681
FSPOR_10630
Small nuclear ribonucleoprotein snrnp u1a.
    
 0.677
FSPOR_3924
U2 small nuclear ribonucleo b.
    
 0.677
FSPOR_10586
Immunoglobulin variable region used by the itc63b heavy chain.
    
 0.663
FSPOR_3484
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.663
FSPOR_10846
ATP-dependent rna helicase fal1; Belongs to the DEAD box helicase family.
   
 0.658
Your Current Organism:
Fusarium sporotrichioides
NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.