FSPOR_3810 protein (Fusarium sporotrichioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSPOR_3810

Cell division control 48; Belongs to the AAA ATPase family. (821 aa)

Predicted Functional Partners:

FSPOR_10886

0.990

FSPOR_6365

0.990

FSPOR_7740

0.981

FSPOR_8165

0.969

FSPOR_11455

0.967

FSPOR_7970

0.965

FSPOR_5342

0.965

FSPOR_10476

0.964

FSPOR_9330

0.964

FSPOR_9553

0.955

Your Current Organism:

Fusarium sporotrichioides

NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSPOR_10476	FSPOR_10886	A0A395RKU0	A0A395RIW1	Ubiquitin thioesterase otu1.	Nuclear protein localization protein 4.	0.968
FSPOR_10476	FSPOR_3810	A0A395RKU0	A0A395SEG4	Ubiquitin thioesterase otu1.	Cell division control 48; Belongs to the AAA ATPase family.	0.964
FSPOR_10476	FSPOR_6365	A0A395RKU0	A0A395S304	Ubiquitin thioesterase otu1.	Uncharacterized protein.	0.967
FSPOR_10476	FSPOR_7970	A0A395RKU0	A0A395RWX1	Ubiquitin thioesterase otu1.	E3 ubiquitin-ligase synoviolin.	0.429
FSPOR_10476	FSPOR_8165	A0A395RKU0	A0A395RVV2	Ubiquitin thioesterase otu1.	Ubiquitin fusion degradation.	0.974
FSPOR_10886	FSPOR_10476	A0A395RIW1	A0A395RKU0	Nuclear protein localization protein 4.	Ubiquitin thioesterase otu1.	0.968
FSPOR_10886	FSPOR_11455	A0A395RIW1	A0A395RGS9	Nuclear protein localization protein 4.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.961
FSPOR_10886	FSPOR_3810	A0A395RIW1	A0A395SEG4	Nuclear protein localization protein 4.	Cell division control 48; Belongs to the AAA ATPase family.	0.990
FSPOR_10886	FSPOR_5342	A0A395RIW1	A0A395S7T2	Nuclear protein localization protein 4.	Uncharacterized protein.	0.670
FSPOR_10886	FSPOR_6365	A0A395RIW1	A0A395S304	Nuclear protein localization protein 4.	Uncharacterized protein.	0.908
FSPOR_10886	FSPOR_7740	A0A395RIW1	A0A395RXQ5	Nuclear protein localization protein 4.	Uncharacterized protein.	0.525
FSPOR_10886	FSPOR_7970	A0A395RIW1	A0A395RWX1	Nuclear protein localization protein 4.	E3 ubiquitin-ligase synoviolin.	0.798
FSPOR_10886	FSPOR_8165	A0A395RIW1	A0A395RVV2	Nuclear protein localization protein 4.	Ubiquitin fusion degradation.	0.998
FSPOR_10886	FSPOR_9330	A0A395RIW1	A0A395RQA0	Nuclear protein localization protein 4.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.965
FSPOR_10886	FSPOR_9553	A0A395RIW1	A0A395RPS3	Nuclear protein localization protein 4.	Proteasome subunit beta.	0.645
FSPOR_11455	FSPOR_10886	A0A395RGS9	A0A395RIW1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Nuclear protein localization protein 4.	0.961
FSPOR_11455	FSPOR_3810	A0A395RGS9	A0A395SEG4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Cell division control 48; Belongs to the AAA ATPase family.	0.967
FSPOR_11455	FSPOR_5342	A0A395RGS9	A0A395S7T2	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.991
FSPOR_11455	FSPOR_6365	A0A395RGS9	A0A395S304	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.950
FSPOR_11455	FSPOR_7740	A0A395RGS9	A0A395RXQ5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.919