Groups of genes that are frequently observed in each other's genomic neighborhood.
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Databases
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSPOR_2440
Acetyltransferase. (186 aa)
Predicted Functional Partners:
FSPOR_5072
Uncharacterized protein.
0.897
FSPOR_7612
Uncharacterized protein.
0.607
FSPOR_11147
ATP-dependent rna helicase dbp7; Belongs to the DEAD box helicase family.
0.431
Your Current Organism:
Fusarium sporotrichioides
NCBI taxonomy Id: 5514 Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides