STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS88583.1N-acetylmuramoyl-L-alanine amidase. (193 aa)    
Predicted Functional Partners:
SIS60776.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.647
SIS84916.1
LPS export ABC transporter protein LptC.
   
 0.601
SIS88595.1
Putative transcriptional regulator.
       0.536
SIS78065.1
Outer membrane lipoprotein-sorting protein.
    
   0.534
SIT05954.1
Outer membrane lipoprotein carrier protein.
    
   0.534
SIS52073.1
Membrane associated serine protease, rhomboid family.
    
   0.489
SIS50860.1
Membrane associated serine protease, rhomboid family.
    
   0.489
SIS91227.1
Membrane associated serine protease, rhomboid family.
    
   0.489
SIT05804.1
Hypothetical protein.
    
   0.489
SIS60320.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
    
 0.488
Your Current Organism:
Chryseobacterium piscicola
NCBI taxonomy Id: 551459
Other names: C. piscicola, CECT 7357, Chryseobacterium piscicola Ilardi et al. 2009, Chryseobacterium sp. VQ-106r, Chryseobacterium sp. VQ-4836s, Chryseobacterium sp. VQ-6316s, DSM 21068, strain VQ-6316s
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