STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420665_00329Unannotated protein. (284 aa)    
Predicted Functional Partners:
GCA_000420665_02548
Unannotated protein.
     
 0.949
GCA_000420665_03189
Unannotated protein.
    
 0.889
GCA_000420665_00332
Unannotated protein.
       0.639
GCA_000420665_00330
Unannotated protein.
       0.614
GCA_000420665_00328
Unannotated protein.
       0.545
GCA_000420665_00752
Unannotated protein.
 
   
 0.524
GCA_000420665_00331
Unannotated protein.
       0.515
GCA_000420665_01811
Unannotated protein.
     0.503
GCA_000420665_03187
Unannotated protein.
 
   
 0.483
GCA_000420665_00601
Unannotated protein.
 
     0.482
Your Current Organism:
Ponticaulis koreensis
NCBI taxonomy Id: 551789
Other names: Hyphomonadaceae bacterium GSW-23, P. koreensis DSM 19734, Ponticaulis koreensis DSM 19734
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.