STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420665_02484Unannotated protein. (83 aa)    
Predicted Functional Partners:
GCA_000420665_01523
Unannotated protein.
  
 0.966
GCA_000420665_02485
Unannotated protein.
       0.767
GCA_000420665_00332
Unannotated protein.
  
  
  0.759
GCA_000420665_02483
Unannotated protein.
       0.621
GCA_000420665_01520
Unannotated protein.
 
 
 0.610
GCA_000420665_01525
Unannotated protein.
 
  
 0.586
GCA_000420665_00776
Unannotated protein.
    
  0.580
GCA_000420665_01725
Unannotated protein.
     
 0.532
GCA_000420665_01510
Unannotated protein.
     
 0.504
GCA_000420665_01727
Unannotated protein.
     
 0.504
Your Current Organism:
Ponticaulis koreensis
NCBI taxonomy Id: 551789
Other names: Hyphomonadaceae bacterium GSW-23, P. koreensis DSM 19734, Ponticaulis koreensis DSM 19734
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.