STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420665_03112Unannotated protein. (229 aa)    
Predicted Functional Partners:
GCA_000420665_01191
Unannotated protein.
   
   0.914
GCA_000420665_01537
Unannotated protein.
   
   0.914
GCA_000420665_02410
Unannotated protein.
   
 
  0.687
GCA_000420665_02645
Unannotated protein.
   
 
  0.687
GCA_000420665_00998
Unannotated protein.
  
 
   0.663
GCA_000420665_00210
Unannotated protein.
  
  
 0.660
GCA_000420665_00014
Unannotated protein.
    
   0.618
GCA_000420665_00022
Unannotated protein.
    
   0.618
GCA_000420665_02866
Unannotated protein.
    
   0.618
GCA_000420665_02378
Unannotated protein.
   
   0.544
Your Current Organism:
Ponticaulis koreensis
NCBI taxonomy Id: 551789
Other names: Hyphomonadaceae bacterium GSW-23, P. koreensis DSM 19734, Ponticaulis koreensis DSM 19734
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.