CUMW_284060 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_284060

RNA_pol_Rpb2_3 domain-containing protein; Belongs to the RNA polymerase beta chain family. (145 aa)

Predicted Functional Partners:

CUMW_160720

0.989

CUMW_106740

0.982

CUMW_035030

0.973

CUMW_019520

0.970

CUMW_207230

0.970

CUMW_057780

0.964

CUMW_057790

0.964

CUMW_021430

0.960

CUMW_018120

0.959

CUMW_026030

0.959

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_018120	CUMW_019520	A0A2H5N667	A0A2H5N6W1	TFIIS-type domain-containing protein.	Uncharacterized protein.	0.887
CUMW_018120	CUMW_021430	A0A2H5N667	A0A2H5N7Y0	TFIIS-type domain-containing protein.	Uncharacterized protein.	0.999
CUMW_018120	CUMW_026030	A0A2H5N667	A0A2H5N9W7	TFIIS-type domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
CUMW_018120	CUMW_035030	A0A2H5N667	A0A2H5NDF5	TFIIS-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.977
CUMW_018120	CUMW_057780	A0A2H5N667	A0A2H5NM08	TFIIS-type domain-containing protein.	Uncharacterized protein.	0.998
CUMW_018120	CUMW_057790	A0A2H5N667	A0A2H5NMT8	TFIIS-type domain-containing protein.	RING-type domain-containing protein.	0.998
CUMW_018120	CUMW_106740	A0A2H5N667	A0A2H5P5U1	TFIIS-type domain-containing protein.	RPOLD domain-containing protein.	0.945
CUMW_018120	CUMW_160720	A0A2H5N667	A0A2H5PRG3	TFIIS-type domain-containing protein.	RPOLD domain-containing protein.	0.999
CUMW_018120	CUMW_207230	A0A2H5N667	A0A2H5Q8Z3	TFIIS-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
CUMW_018120	CUMW_284060	A0A2H5N667	A0A2H5MZ31	TFIIS-type domain-containing protein.	RNA_pol_Rpb2_3 domain-containing protein; Belongs to the RNA polymerase beta chain family.	0.959
CUMW_019520	CUMW_018120	A0A2H5N6W1	A0A2H5N667	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.887
CUMW_019520	CUMW_021430	A0A2H5N6W1	A0A2H5N7Y0	Uncharacterized protein.	Uncharacterized protein.	0.984
CUMW_019520	CUMW_026030	A0A2H5N6W1	A0A2H5N9W7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.436
CUMW_019520	CUMW_035030	A0A2H5N6W1	A0A2H5NDF5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
CUMW_019520	CUMW_057780	A0A2H5N6W1	A0A2H5NM08	Uncharacterized protein.	Uncharacterized protein.	0.982
CUMW_019520	CUMW_057790	A0A2H5N6W1	A0A2H5NMT8	Uncharacterized protein.	RING-type domain-containing protein.	0.982
CUMW_019520	CUMW_106740	A0A2H5N6W1	A0A2H5P5U1	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
CUMW_019520	CUMW_160720	A0A2H5N6W1	A0A2H5PRG3	Uncharacterized protein.	RPOLD domain-containing protein.	0.995
CUMW_019520	CUMW_284060	A0A2H5N6W1	A0A2H5MZ31	Uncharacterized protein.	RNA_pol_Rpb2_3 domain-containing protein; Belongs to the RNA polymerase beta chain family.	0.970
CUMW_021430	CUMW_018120	A0A2H5N7Y0	A0A2H5N667	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.999