STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_018070GRAS domain-containing protein; Belongs to the GRAS family. (430 aa)    
Predicted Functional Partners:
CUMW_282400
HECT domain-containing protein.
   
 0.875
CUMW_141130
HECT domain-containing protein.
   
 0.875
CUMW_093540
HECT domain-containing protein.
   
 0.865
CUMW_144570
U-box domain-containing protein.
   
 0.815
CUMW_086920
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.812
CUMW_188550
Uncharacterized protein.
    
 0.786
CUMW_188560
Uncharacterized protein.
    
 0.786
CUMW_011050
WD_REPEATS_REGION domain-containing protein.
   
 0.770
CUMW_227990
Uncharacterized protein.
    
 0.744
CUMW_243380
OTU domain-containing protein.
    
 0.738
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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