STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_023800Uncharacterized protein. (563 aa)    
Predicted Functional Partners:
CUMW_065140
MIF4G domain-containing protein.
   
 0.739
CUMW_241310
Nuclear cap-binding protein subunit 2.
    
 0.736
CUMW_021430
Uncharacterized protein.
   
  0.693
CUMW_246940
RPOL4c domain-containing protein.
    
  0.677
CUMW_018120
TFIIS-type domain-containing protein.
    
  0.676
CUMW_015650
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
  0.656
CUMW_160720
RPOLD domain-containing protein.
   
 
  0.653
CUMW_172350
Uncharacterized protein.
   
 
 0.639
CUMW_157560
MPN domain-containing protein.
   
   0.638
CUMW_130400
RRM domain-containing protein.
   
  0.625
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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