STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_038590Uncharacterized protein. (788 aa)    
Predicted Functional Partners:
CUMW_281170
Hist_deacetyl domain-containing protein.
    
 
 0.823
CUMW_275120
WD_REPEATS_REGION domain-containing protein.
    
 
 0.802
CUMW_175710
WD_REPEATS_REGION domain-containing protein.
    
 
 0.802
CUMW_095130
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 
 0.747
CUMW_118670
Hist_deacetyl domain-containing protein.
    
 
 0.747
CUMW_197270
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 
 0.747
CUMW_037590
WD_REPEATS_REGION domain-containing protein.
    
 
 0.730
CUMW_093610
WD_REPEATS_REGION domain-containing protein.
    
 
 0.730
CUMW_169570
WD_REPEATS_REGION domain-containing protein.
    
 
 0.730
CUMW_022470
HDAC_interact domain-containing protein.
    
 
 0.702
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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