STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_038630Aminotran_1_2 domain-containing protein. (483 aa)    
Predicted Functional Partners:
CUMW_193000
Uncharacterized protein.
  
0.995
CUMW_288960
Uncharacterized protein.
   
 0.994
CUMW_068100
Uncharacterized protein.
     
 0.973
CUMW_140280
Tryptophan synthase.
    
 0.971
CUMW_150340
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.963
CUMW_109320
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.959
CUMW_091720
Uncharacterized protein.
    
 
 0.955
CUMW_010010
Tryptophan synthase.
    
 0.952
CUMW_039680
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the peptidase M3 family.
  
 
 0.952
CUMW_095380
PALP domain-containing protein.
    
 0.952
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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