CUMW_049950 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_049950

BHLH domain-containing protein. (546 aa)

Predicted Functional Partners:

CUMW_191450

0.873

CUMW_191580

0.869

CUMW_017900

0.860

CUMW_085870

0.854

CUMW_105690

0.854

CUMW_076990

0.849

CUMW_190800

0.849

CUMW_285040

0.843

CUMW_127360

0.843

CUMW_253820

0.604

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_017900	CUMW_049950	A0A2H5N646	A0A2H5NJ13	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	BHLH domain-containing protein.	0.860
CUMW_017900	CUMW_085870	A0A2H5N646	A0A2H5NXV8	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	BHLH domain-containing protein.	0.967
CUMW_017900	CUMW_105690	A0A2H5N646	A0A2H5P5F3	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	BHLH domain-containing protein.	0.948
CUMW_017900	CUMW_191450	A0A2H5N646	A0A2H5Q309	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.896
CUMW_017900	CUMW_191580	A0A2H5N646	A0A2H5Q374	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	BHLH domain-containing protein.	0.967
CUMW_017900	CUMW_253820	A0A2H5N646	A0A2H5QR36	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.489
CUMW_049950	CUMW_017900	A0A2H5NJ13	A0A2H5N646	BHLH domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.860
CUMW_049950	CUMW_076990	A0A2H5NJ13	A0A2H5NUG0	BHLH domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.849
CUMW_049950	CUMW_085870	A0A2H5NJ13	A0A2H5NXV8	BHLH domain-containing protein.	BHLH domain-containing protein.	0.854
CUMW_049950	CUMW_105690	A0A2H5NJ13	A0A2H5P5F3	BHLH domain-containing protein.	BHLH domain-containing protein.	0.854
CUMW_049950	CUMW_127360	A0A2H5NJ13	A0A2H5PDT2	BHLH domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.843
CUMW_049950	CUMW_190800	A0A2H5NJ13	A0A2H5Q2Z2	BHLH domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.849
CUMW_049950	CUMW_191450	A0A2H5NJ13	A0A2H5Q309	BHLH domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.873
CUMW_049950	CUMW_191580	A0A2H5NJ13	A0A2H5Q374	BHLH domain-containing protein.	BHLH domain-containing protein.	0.869
CUMW_049950	CUMW_253820	A0A2H5NJ13	A0A2H5QR36	BHLH domain-containing protein.	Uncharacterized protein.	0.604
CUMW_049950	CUMW_285040	A0A2H5NJ13	A0A2H5MUU0	BHLH domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.843
CUMW_076990	CUMW_049950	A0A2H5NUG0	A0A2H5NJ13	GRAS domain-containing protein; Belongs to the GRAS family.	BHLH domain-containing protein.	0.849
CUMW_076990	CUMW_085870	A0A2H5NUG0	A0A2H5NXV8	GRAS domain-containing protein; Belongs to the GRAS family.	BHLH domain-containing protein.	0.922
CUMW_076990	CUMW_105690	A0A2H5NUG0	A0A2H5P5F3	GRAS domain-containing protein; Belongs to the GRAS family.	BHLH domain-containing protein.	0.825
CUMW_076990	CUMW_190800	A0A2H5NUG0	A0A2H5Q2Z2	GRAS domain-containing protein; Belongs to the GRAS family.	GRAS domain-containing protein; Belongs to the GRAS family.	0.887