STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_050790WD_REPEATS_REGION domain-containing protein. (410 aa)    
Predicted Functional Partners:
CUMW_144890
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
  
 
 0.871
CUMW_132560
Uncharacterized protein.
   
  0.699
CUMW_220850
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.655
CUMW_131150
WD_REPEATS_REGION domain-containing protein.
   
    0.626
CUMW_045100
WD_REPEATS_REGION domain-containing protein.
  
    0.574
CUMW_254360
WD_REPEATS_REGION domain-containing protein.
  
    0.572
CUMW_254370
WD_REPEATS_REGION domain-containing protein.
  
    0.571
CUMW_131280
WD_REPEATS_REGION domain-containing protein.
  
    0.543
CUMW_199080
WD_REPEATS_REGION domain-containing protein.
   
  
 0.542
CUMW_152720
S1-like domain-containing protein.
   
    0.540
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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