CUMW_081350 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_081350

Uncharacterized protein. (628 aa)

Predicted Functional Partners:

CUMW_070850

0.987

CUMW_070360

0.982

CUMW_234130

0.981

CUMW_037180

0.980

CUMW_106740

0.977

CUMW_019520

0.969

CUMW_207230

0.969

CUMW_021430

0.965

CUMW_160720

0.956

CUMW_057780

0.950

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_019520	CUMW_021430	A0A2H5N6W1	A0A2H5N7Y0	Uncharacterized protein.	Uncharacterized protein.	0.984
CUMW_019520	CUMW_037180	A0A2H5N6W1	A0A2H5NE77	Uncharacterized protein.	Uncharacterized protein.	0.997
CUMW_019520	CUMW_057780	A0A2H5N6W1	A0A2H5NM08	Uncharacterized protein.	Uncharacterized protein.	0.982
CUMW_019520	CUMW_070360	A0A2H5N6W1	A0A2H5NRU8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.989
CUMW_019520	CUMW_070850	A0A2H5N6W1	A0A2H5NS83	Uncharacterized protein.	Uncharacterized protein.	0.994
CUMW_019520	CUMW_081350	A0A2H5N6W1	A0A2H5NW27	Uncharacterized protein.	Uncharacterized protein.	0.969
CUMW_019520	CUMW_106740	A0A2H5N6W1	A0A2H5P5U1	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
CUMW_019520	CUMW_160720	A0A2H5N6W1	A0A2H5PRG3	Uncharacterized protein.	RPOLD domain-containing protein.	0.995
CUMW_019520	CUMW_234130	A0A2H5N6W1	A0A2H5QIQ8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CUMW_021430	CUMW_019520	A0A2H5N7Y0	A0A2H5N6W1	Uncharacterized protein.	Uncharacterized protein.	0.984
CUMW_021430	CUMW_037180	A0A2H5N7Y0	A0A2H5NE77	Uncharacterized protein.	Uncharacterized protein.	0.999
CUMW_021430	CUMW_057780	A0A2H5N7Y0	A0A2H5NM08	Uncharacterized protein.	Uncharacterized protein.	0.999
CUMW_021430	CUMW_070360	A0A2H5N7Y0	A0A2H5NRU8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
CUMW_021430	CUMW_070850	A0A2H5N7Y0	A0A2H5NS83	Uncharacterized protein.	Uncharacterized protein.	0.999
CUMW_021430	CUMW_081350	A0A2H5N7Y0	A0A2H5NW27	Uncharacterized protein.	Uncharacterized protein.	0.965
CUMW_021430	CUMW_106740	A0A2H5N7Y0	A0A2H5P5U1	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
CUMW_021430	CUMW_160720	A0A2H5N7Y0	A0A2H5PRG3	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
CUMW_021430	CUMW_207230	A0A2H5N7Y0	A0A2H5Q8Z3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
CUMW_021430	CUMW_234130	A0A2H5N7Y0	A0A2H5QIQ8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CUMW_037180	CUMW_019520	A0A2H5NE77	A0A2H5N6W1	Uncharacterized protein.	Uncharacterized protein.	0.997