STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_128070Uncharacterized protein. (539 aa)    
Predicted Functional Partners:
CUMW_009050
Uncharacterized protein.
      
 0.545
CUMW_002210
TPR_REGION domain-containing protein.
      
 0.499
CUMW_178200
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
      
 0.471
CUMW_127460
WD_REPEATS_REGION domain-containing protein.
    
 
 0.440
CUMW_199210
WD_REPEATS_REGION domain-containing protein.
    
 
 0.440
CUMW_057150
Cleavage and polyadenylation specificity factor subunit 2.
      
 0.435
CUMW_046420
RRM domain-containing protein.
      
 0.424
CUMW_132520
LEA_2 domain-containing protein.
      
 0.414
CUMW_170980
LEA_2 domain-containing protein.
      
 0.414
CUMW_030950
TPR_REGION domain-containing protein.
      
 0.410
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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