STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_194120Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (689 aa)    
Predicted Functional Partners:
CUMW_057840
Uncharacterized protein.
  
    0.858
CUMW_061650
BPL/LPL catalytic domain-containing protein.
  
  
 0.614
CUMW_061800
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
  
 0.576
CUMW_108170
RNB domain-containing protein.
  
 0.576
CUMW_194430
Uncharacterized protein; Belongs to the RNR ribonuclease family.
  
 0.576
CUMW_198240
Uncharacterized protein.
    
 0.573
CUMW_048740
S1 motif domain-containing protein.
   
 0.557
CUMW_099800
S1 motif domain-containing protein.
   
 0.557
CUMW_282130
Uncharacterized protein.
   
 0.544
CUMW_030690
Str_synth domain-containing protein.
   
 0.544
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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