CUMW_205690 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_205690

Uncharacterized protein. (134 aa)

Predicted Functional Partners:

CUMW_103510

0.990

CUMW_003820

0.952

CUMW_227990

0.952

CUMW_282400

0.951

CUMW_141130

0.951

CUMW_093540

0.950

CUMW_273290

0.939

CUMW_201300

0.932

CUMW_092830

0.929

CUMW_164600

0.929

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_003820	CUMW_092830	A0A2H5MXI4	A0A2H5P0K4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.999
CUMW_003820	CUMW_164600	A0A2H5MXI4	A0A2H5PT03	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
CUMW_003820	CUMW_201300	A0A2H5MXI4	A0A2H5Q6T4	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
CUMW_003820	CUMW_205690	A0A2H5MXI4	A0A2H5Q8D7	Uncharacterized protein.	Uncharacterized protein.	0.952
CUMW_003820	CUMW_273290	A0A2H5MXI4	A0A2H5MVV9	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CUMW_092830	CUMW_003820	A0A2H5P0K4	A0A2H5MXI4	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.999
CUMW_092830	CUMW_164600	A0A2H5P0K4	A0A2H5PT03	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
CUMW_092830	CUMW_201300	A0A2H5P0K4	A0A2H5Q6T4	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
CUMW_092830	CUMW_205690	A0A2H5P0K4	A0A2H5Q8D7	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.929
CUMW_092830	CUMW_273290	A0A2H5P0K4	A0A2H5MVV9	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CUMW_093540	CUMW_141130	A0A2H5P0V0	A0A2H5PJ19	HECT domain-containing protein.	HECT domain-containing protein.	0.999
CUMW_093540	CUMW_205690	A0A2H5P0V0	A0A2H5Q8D7	HECT domain-containing protein.	Uncharacterized protein.	0.950
CUMW_093540	CUMW_227990	A0A2H5P0V0	A0A2H5QGH9	HECT domain-containing protein.	Uncharacterized protein.	0.807
CUMW_093540	CUMW_282400	A0A2H5P0V0	A0A2H5N206	HECT domain-containing protein.	HECT domain-containing protein.	0.999
CUMW_103510	CUMW_141130	A0A2H5P4I9	A0A2H5PJ19	Uncharacterized protein.	HECT domain-containing protein.	0.400
CUMW_103510	CUMW_205690	A0A2H5P4I9	A0A2H5Q8D7	Uncharacterized protein.	Uncharacterized protein.	0.990
CUMW_103510	CUMW_227990	A0A2H5P4I9	A0A2H5QGH9	Uncharacterized protein.	Uncharacterized protein.	0.984
CUMW_103510	CUMW_282400	A0A2H5P4I9	A0A2H5N206	Uncharacterized protein.	HECT domain-containing protein.	0.400
CUMW_141130	CUMW_093540	A0A2H5PJ19	A0A2H5P0V0	HECT domain-containing protein.	HECT domain-containing protein.	0.999
CUMW_141130	CUMW_103510	A0A2H5PJ19	A0A2H5P4I9	HECT domain-containing protein.	Uncharacterized protein.	0.400