STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUMW_221590U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (318 aa)    
Predicted Functional Partners:
CUMW_098660
Uncharacterized protein.
    
   0.924
CUMW_011120
TPR_REGION domain-containing protein.
    
 
 0.867
CUMW_019160
WD_REPEATS_REGION domain-containing protein.
    
   0.838
CUMW_183440
Uncharacterized protein.
    
   0.820
CUMW_202750
G-patch domain-containing protein.
    
   0.782
CUMW_205440
Uncharacterized protein.
    
   0.753
CUMW_080630
RRM domain-containing protein.
    
   0.728
CUMW_109020
Uncharacterized protein.
    
   0.728
CUMW_001580
Uncharacterized protein.
    
 
 0.722
CUMW_077570
SKIP_SNW domain-containing protein.
    
 
 0.722
Your Current Organism:
Citrus unshiu
NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin
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