CUMW_221610 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_221610

Uncharacterized protein. (311 aa)

Predicted Functional Partners:

CUMW_006860

0.595

CUMW_029260

0.526

CUMW_051730

0.516

CUMW_148130

0.515

CUMW_287110

0.514

CUMW_245890

0.512

CUMW_221510

0.510

CUMW_132100

0.507

CUMW_221320

0.502

CUMW_167140

0.501

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_006860	CUMW_221610	A0A2H5MZ98	A0A2H5QEB1	Uncharacterized protein.	Uncharacterized protein.	0.595
CUMW_006860	CUMW_245890	A0A2H5MZ98	A0A2H5QN91	Uncharacterized protein.	Uncharacterized protein.	0.548
CUMW_029260	CUMW_051730	A0A2H5NB97	A0A2H5NJR6	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.499
CUMW_029260	CUMW_132100	A0A2H5NB97	A0A2H5PFL3	Uncharacterized protein.	Uncharacterized protein.	0.535
CUMW_029260	CUMW_148130	A0A2H5NB97	A0A2H5PMF4	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.531
CUMW_029260	CUMW_167140	A0A2H5NB97	A0A2H5PU01	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.511
CUMW_029260	CUMW_221320	A0A2H5NB97	A0A2H5QE63	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.479
CUMW_029260	CUMW_221510	A0A2H5NB97	A0A2H5QEA6	Uncharacterized protein.	Uncharacterized protein.	0.555
CUMW_029260	CUMW_221610	A0A2H5NB97	A0A2H5QEB1	Uncharacterized protein.	Uncharacterized protein.	0.526
CUMW_029260	CUMW_245890	A0A2H5NB97	A0A2H5QN91	Uncharacterized protein.	Uncharacterized protein.	0.535
CUMW_029260	CUMW_287110	A0A2H5NB97	A0A2H5MUI7	Uncharacterized protein.	Uncharacterized protein.	0.527
CUMW_051730	CUMW_029260	A0A2H5NJR6	A0A2H5NB97	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.499
CUMW_051730	CUMW_132100	A0A2H5NJR6	A0A2H5PFL3	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.924
CUMW_051730	CUMW_148130	A0A2H5NJR6	A0A2H5PMF4	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	AP2/ERF domain-containing protein.	0.473
CUMW_051730	CUMW_167140	A0A2H5NJR6	A0A2H5PU01	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	AP2/ERF domain-containing protein.	0.467
CUMW_051730	CUMW_221320	A0A2H5NJR6	A0A2H5QE63	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.916
CUMW_051730	CUMW_221510	A0A2H5NJR6	A0A2H5QEA6	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.906
CUMW_051730	CUMW_221610	A0A2H5NJR6	A0A2H5QEB1	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.516
CUMW_051730	CUMW_245890	A0A2H5NJR6	A0A2H5QN91	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.492
CUMW_051730	CUMW_287110	A0A2H5NJR6	A0A2H5MUI7	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.458