CUMW_269290 protein (Citrus unshiu) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUMW_269290

Malectin domain-containing protein. (195 aa)

Predicted Functional Partners:

CUMW_225360

0.906

CUMW_237740

0.593

CUMW_047740

0.588

CUMW_123470

0.585

CUMW_004370

0.581

CUMW_028330

0.579

CUMW_200600

0.573

CUMW_237770

0.572

CUMW_278360

0.569

CUMW_128760

0.567

Your Current Organism:

Citrus unshiu

NCBI taxonomy Id: 55188
Other names: C. unshiu, Citrus unshiu Marcow., Satsuma orange, satsuma mandarin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUMW_004370	CUMW_028330	A0A2H5MXT3	A0A2H5NCF9	VQ domain-containing protein.	Uncharacterized protein.	0.575
CUMW_004370	CUMW_047740	A0A2H5MXT3	A0A2H5NI80	VQ domain-containing protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.595
CUMW_004370	CUMW_123470	A0A2H5MXT3	A0A2H5PD55	VQ domain-containing protein.	Uncharacterized protein.	0.570
CUMW_004370	CUMW_128760	A0A2H5MXT3	A0A2H5PEB9	VQ domain-containing protein.	NAC domain-containing protein.	0.548
CUMW_004370	CUMW_200600	A0A2H5MXT3	A0A2H5Q6M0	VQ domain-containing protein.	Phytocyanin domain-containing protein.	0.593
CUMW_004370	CUMW_237740	A0A2H5MXT3	A0A2H5QK31	VQ domain-containing protein.	Methyltransferase.	0.611
CUMW_004370	CUMW_237770	A0A2H5MXT3	A0A2H5QK39	VQ domain-containing protein.	Phytocyanin domain-containing protein.	0.587
CUMW_004370	CUMW_269290	A0A2H5MXT3	A0A2H5QXQ8	VQ domain-containing protein.	Malectin domain-containing protein.	0.581
CUMW_004370	CUMW_278360	A0A2H5MXT3	A0A2H5N550	VQ domain-containing protein.	Uncharacterized protein.	0.526
CUMW_028330	CUMW_004370	A0A2H5NCF9	A0A2H5MXT3	Uncharacterized protein.	VQ domain-containing protein.	0.575
CUMW_028330	CUMW_047740	A0A2H5NCF9	A0A2H5NI80	Uncharacterized protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.590
CUMW_028330	CUMW_123470	A0A2H5NCF9	A0A2H5PD55	Uncharacterized protein.	Uncharacterized protein.	0.577
CUMW_028330	CUMW_128760	A0A2H5NCF9	A0A2H5PEB9	Uncharacterized protein.	NAC domain-containing protein.	0.563
CUMW_028330	CUMW_200600	A0A2H5NCF9	A0A2H5Q6M0	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.640
CUMW_028330	CUMW_225360	A0A2H5NCF9	A0A2H5QFP3	Uncharacterized protein.	Uncharacterized protein.	0.912
CUMW_028330	CUMW_237740	A0A2H5NCF9	A0A2H5QK31	Uncharacterized protein.	Methyltransferase.	0.589
CUMW_028330	CUMW_237770	A0A2H5NCF9	A0A2H5QK39	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.637
CUMW_028330	CUMW_269290	A0A2H5NCF9	A0A2H5QXQ8	Uncharacterized protein.	Malectin domain-containing protein.	0.579
CUMW_028330	CUMW_278360	A0A2H5NCF9	A0A2H5N550	Uncharacterized protein.	Uncharacterized protein.	0.549
CUMW_047740	CUMW_004370	A0A2H5NI80	A0A2H5MXT3	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	VQ domain-containing protein.	0.595