Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM31105.1 | SHM31149.1 | SAMN05192549_101260 | SAMN05192549_101261 | 23S rRNA pseudouridine2604 synthase. | L-threonine aldolase. | 0.786 |
SHM31105.1 | SHM31187.1 | SAMN05192549_101260 | SAMN05192549_101262 | 23S rRNA pseudouridine2604 synthase. | Methyltransferase domain-containing protein. | 0.831 |
SHM31105.1 | SHM31221.1 | SAMN05192549_101260 | SAMN05192549_101263 | 23S rRNA pseudouridine2604 synthase. | FeS assembly protein IscX. | 0.773 |
SHM31105.1 | SHM31250.1 | SAMN05192549_101260 | SAMN05192549_101264 | 23S rRNA pseudouridine2604 synthase. | Ferredoxin, 2Fe-2S. | 0.773 |
SHM31105.1 | hscA | SAMN05192549_101260 | SAMN05192549_101265 | 23S rRNA pseudouridine2604 synthase. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.728 |
SHM31105.1 | hscB | SAMN05192549_101260 | SAMN05192549_101266 | 23S rRNA pseudouridine2604 synthase. | Co-chaperone protein HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.562 |
SHM31149.1 | SHM31105.1 | SAMN05192549_101261 | SAMN05192549_101260 | L-threonine aldolase. | 23S rRNA pseudouridine2604 synthase. | 0.786 |
SHM31149.1 | SHM31187.1 | SAMN05192549_101261 | SAMN05192549_101262 | L-threonine aldolase. | Methyltransferase domain-containing protein. | 0.786 |
SHM31149.1 | SHM31221.1 | SAMN05192549_101261 | SAMN05192549_101263 | L-threonine aldolase. | FeS assembly protein IscX. | 0.773 |
SHM31149.1 | SHM31250.1 | SAMN05192549_101261 | SAMN05192549_101264 | L-threonine aldolase. | Ferredoxin, 2Fe-2S. | 0.773 |
SHM31149.1 | hscA | SAMN05192549_101261 | SAMN05192549_101265 | L-threonine aldolase. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.728 |
SHM31149.1 | hscB | SAMN05192549_101261 | SAMN05192549_101266 | L-threonine aldolase. | Co-chaperone protein HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.562 |
SHM31187.1 | SHM31105.1 | SAMN05192549_101262 | SAMN05192549_101260 | Methyltransferase domain-containing protein. | 23S rRNA pseudouridine2604 synthase. | 0.831 |
SHM31187.1 | SHM31149.1 | SAMN05192549_101262 | SAMN05192549_101261 | Methyltransferase domain-containing protein. | L-threonine aldolase. | 0.786 |
SHM31187.1 | SHM31221.1 | SAMN05192549_101262 | SAMN05192549_101263 | Methyltransferase domain-containing protein. | FeS assembly protein IscX. | 0.778 |
SHM31187.1 | SHM31250.1 | SAMN05192549_101262 | SAMN05192549_101264 | Methyltransferase domain-containing protein. | Ferredoxin, 2Fe-2S. | 0.773 |
SHM31187.1 | SHN12630.1 | SAMN05192549_101262 | SAMN05192549_104478 | Methyltransferase domain-containing protein. | Membrane protein implicated in regulation of membrane protease activity. | 0.578 |
SHM31187.1 | SHN44231.1 | SAMN05192549_101262 | SAMN05192549_1218 | Methyltransferase domain-containing protein. | Sulfite reductase (NADPH) hemoprotein beta-component. | 0.664 |
SHM31187.1 | SHN44273.1 | SAMN05192549_101262 | SAMN05192549_12122 | Methyltransferase domain-containing protein. | Sirohydrochlorin cobaltochelatase. | 0.666 |
SHM31187.1 | cobQ | SAMN05192549_101262 | SAMN05192549_12414 | Methyltransferase domain-containing protein. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.618 |
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