Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM33974.1 | SHM46785.1 | SAMN05192549_101342 | SAMN05192549_101661 | Lipoprotein NlpD. | Chemotaxis protein CheC. | 0.680 |
SHM33974.1 | SHM49146.1 | SAMN05192549_101342 | SAMN05192549_101721 | Lipoprotein NlpD. | Flagellar motor switch protein FliM. | 0.698 |
SHM33974.1 | SHN10526.1 | SAMN05192549_101342 | SAMN05192549_104333 | Lipoprotein NlpD. | Flagellar motor switch protein FliM. | 0.698 |
SHM33974.1 | SHN32706.1 | SAMN05192549_101342 | SAMN05192549_107319 | Lipoprotein NlpD. | Membrane-bound lytic murein transglycosylase D. | 0.634 |
SHM33974.1 | SHN33614.1 | SAMN05192549_101342 | SAMN05192549_107412 | Lipoprotein NlpD. | Peptidase family M23. | 0.637 |
SHM33974.1 | SHN35790.1 | SAMN05192549_101342 | SAMN05192549_10892 | Lipoprotein NlpD. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.728 |
SHM33974.1 | hfq | SAMN05192549_101342 | SAMN05192549_101327 | Lipoprotein NlpD. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.697 |
SHM33974.1 | pcm | SAMN05192549_101342 | SAMN05192549_101343 | Lipoprotein NlpD. | protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.726 |
SHM33974.1 | rpoS | SAMN05192549_101342 | SAMN05192549_101341 | Lipoprotein NlpD. | RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.854 |
SHM33974.1 | surE | SAMN05192549_101342 | SAMN05192549_101344 | Lipoprotein NlpD. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.758 |
SHM46785.1 | SHM33974.1 | SAMN05192549_101661 | SAMN05192549_101342 | Chemotaxis protein CheC. | Lipoprotein NlpD. | 0.680 |
SHM46785.1 | SHM49146.1 | SAMN05192549_101661 | SAMN05192549_101721 | Chemotaxis protein CheC. | Flagellar motor switch protein FliM. | 0.994 |
SHM46785.1 | SHN10526.1 | SAMN05192549_101661 | SAMN05192549_104333 | Chemotaxis protein CheC. | Flagellar motor switch protein FliM. | 0.994 |
SHM46785.1 | SHN33614.1 | SAMN05192549_101661 | SAMN05192549_107412 | Chemotaxis protein CheC. | Peptidase family M23. | 0.680 |
SHM49146.1 | SHM33974.1 | SAMN05192549_101721 | SAMN05192549_101342 | Flagellar motor switch protein FliM. | Lipoprotein NlpD. | 0.698 |
SHM49146.1 | SHM46785.1 | SAMN05192549_101721 | SAMN05192549_101661 | Flagellar motor switch protein FliM. | Chemotaxis protein CheC. | 0.994 |
SHM49146.1 | SHN33614.1 | SAMN05192549_101721 | SAMN05192549_107412 | Flagellar motor switch protein FliM. | Peptidase family M23. | 0.729 |
SHN10526.1 | SHM33974.1 | SAMN05192549_104333 | SAMN05192549_101342 | Flagellar motor switch protein FliM. | Lipoprotein NlpD. | 0.698 |
SHN10526.1 | SHM46785.1 | SAMN05192549_104333 | SAMN05192549_101661 | Flagellar motor switch protein FliM. | Chemotaxis protein CheC. | 0.994 |
SHN10526.1 | SHN33614.1 | SAMN05192549_104333 | SAMN05192549_107412 | Flagellar motor switch protein FliM. | Peptidase family M23. | 0.698 |
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