STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM38168.1Two component, sigma54 specific, transcriptional regulator, Fis family. (466 aa)    
Predicted Functional Partners:
SHM37008.1
Signal transduction histidine kinase.
  
 0.961
SHM38077.1
Two-component system, NtrC family, sensor histidine kinase GlrK.
 
 
 0.960
SHM90569.1
PAS domain S-box-containing protein.
  
 0.922
SHN17131.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 0.917
SHN24373.1
HD-like signal output (HDOD) domain, no enzymatic activity.
 
 0.902
SHN41141.1
Signal transduction histidine kinase.
 
0.889
SHN35790.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.882
SHM50137.1
Flagellar biosynthesis protein FlhG.
  
 0.878
SHM25941.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.861
SHN09668.1
Signal transduction histidine kinase.
  
 0.848
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.