STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM67334.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
SHM27444.1
Signal transduction histidine kinase.
 
 0.999
SHM67088.1
Hypothetical protein.
  
0.999
SHM67127.1
Hpt domain-containing protein.
  
 0.999
SHM67362.1
Hypothetical protein.
 
 0.999
SHM67462.1
PAS domain S-box-containing protein.
 
 0.999
SHM61944.1
Signal transduction histidine kinase.
  
 0.999
SHM68769.1
PAS domain S-box-containing protein.
 
 0.999
SHM73600.1
PAS domain S-box-containing protein.
 
 0.999
SHM73632.1
Signal transduction histidine kinase.
 
 0.999
SHM73877.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.999
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.