STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM75507.1Imidazolonepropionase. (447 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.919
SHM75447.1
Reactive intermediate/imine deaminase.
      0.875
SHM75479.1
Membrane dipeptidase.
 
     0.868
SHM42628.1
Histidine ammonia-lyase.
  
  
 0.743
hutH
Histidine ammonia-lyase.
  
  
 0.743
SHN12585.1
Imidazolonepropionase.
  
     0.738
SHM75542.1
Aromatic amino acid:proton symporter, AAT family.
  
    0.661
SHN26769.1
N-formylglutamate deformylase.
  
  
 0.641
SHN38389.1
Peptidase family M28.
  
     0.637
SHN26727.1
Hypothetical protein.
  
     0.610
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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