SHM91849.1 protein (Duganella sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHM91849.1

Protein of unknown function. (509 aa)

Predicted Functional Partners:

SHM91795.1

0.919

SHM91771.1

0.904

SHN31858.1

0.853

SHN21002.1

0.837

SHM36423.1

0.807

SHN20443.1

0.807

SHN38029.1

0.807

SHN40063.1

0.807

SHM96183.1

0.799

SHN42824.1

0.795

Your Current Organism:

Duganella sacchari

NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHM36423.1	SHM91849.1	SAMN05192549_101410	SAMN05192549_103228	Glucan 1,3-beta-glucosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Protein of unknown function.	0.807
SHM36423.1	SHN40063.1	SAMN05192549_101410	SAMN05192549_110127	Glucan 1,3-beta-glucosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Carbohydrate binding module (family 6).	0.530
SHM91771.1	SHM91795.1	SAMN05192549_103225	SAMN05192549_103226	HupE / UreJ protein.	Hypothetical protein.	0.951
SHM91771.1	SHM91849.1	SAMN05192549_103225	SAMN05192549_103228	HupE / UreJ protein.	Protein of unknown function.	0.904
SHM91795.1	SHM91771.1	SAMN05192549_103226	SAMN05192549_103225	Hypothetical protein.	HupE / UreJ protein.	0.951
SHM91795.1	SHM91849.1	SAMN05192549_103226	SAMN05192549_103228	Hypothetical protein.	Protein of unknown function.	0.919
SHM91849.1	SHM36423.1	SAMN05192549_103228	SAMN05192549_101410	Protein of unknown function.	Glucan 1,3-beta-glucosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.807
SHM91849.1	SHM91771.1	SAMN05192549_103228	SAMN05192549_103225	Protein of unknown function.	HupE / UreJ protein.	0.904
SHM91849.1	SHM91795.1	SAMN05192549_103228	SAMN05192549_103226	Protein of unknown function.	Hypothetical protein.	0.919
SHM91849.1	SHM96183.1	SAMN05192549_103228	SAMN05192549_103384	Protein of unknown function.	PEP-CTERM protein-sorting domain-containing protein.	0.799
SHM91849.1	SHN20443.1	SAMN05192549_103228	SAMN05192549_105358	Protein of unknown function.	REJ domain-containing protein.	0.807
SHM91849.1	SHN21002.1	SAMN05192549_103228	SAMN05192549_105407	Protein of unknown function.	Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.	0.837
SHM91849.1	SHN31858.1	SAMN05192549_103228	SAMN05192549_107215	Protein of unknown function.	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	0.853
SHM91849.1	SHN38029.1	SAMN05192549_103228	SAMN05192549_10933	Protein of unknown function.	Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.807
SHM91849.1	SHN40063.1	SAMN05192549_103228	SAMN05192549_110127	Protein of unknown function.	Carbohydrate binding module (family 6).	0.807
SHM91849.1	SHN42824.1	SAMN05192549_103228	SAMN05192549_11548	Protein of unknown function.	PEP-CTERM protein-sorting domain-containing protein.	0.795
SHM96183.1	SHM91849.1	SAMN05192549_103384	SAMN05192549_103228	PEP-CTERM protein-sorting domain-containing protein.	Protein of unknown function.	0.799
SHM96183.1	SHN20443.1	SAMN05192549_103384	SAMN05192549_105358	PEP-CTERM protein-sorting domain-containing protein.	REJ domain-containing protein.	0.713
SHM96183.1	SHN31858.1	SAMN05192549_103384	SAMN05192549_107215	PEP-CTERM protein-sorting domain-containing protein.	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	0.703
SHM96183.1	SHN42824.1	SAMN05192549_103384	SAMN05192549_11548	PEP-CTERM protein-sorting domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.655