STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN04826.1Sugar phosphate permease. (409 aa)    
Predicted Functional Partners:
SHN04850.1
Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.695
SHN04803.1
AraC-type DNA-binding protein.
 
   
 0.669
SHM37595.1
iron(III) transport system substrate-binding protein.
  
  
 0.668
SHN38455.1
Chorismate mutase.
   
 
 0.620
SHN43579.1
Predicted arabinose efflux permease, MFS family.
  
  
 0.609
SHN04201.1
MFS transporter, FSR family, fosmidomycin resistance protein.
 
 
0.592
SHN23336.1
Predicted arabinose efflux permease, MFS family.
  
  
 0.541
SHN17253.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.539
SHM97922.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
    
 0.477
SHM89902.1
Hypothetical protein.
  
     0.475
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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