STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN21085.1Outer membrane protein (porin). (439 aa)    
Predicted Functional Partners:
SHM93937.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.838
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.763
SHN42146.1
Outer membrane protein (porin).
  
  
  0.752
SHN36912.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
 
 0.745
SHN40660.1
Phasin family protein.
  
     0.740
SHM30184.1
SmpA / OmlA family protein.
  
     0.734
SHN42771.1
Hypothetical protein.
  
     0.731
SHM25047.1
Iron complex outermembrane recepter protein.
    
 
 0.713
SHN44655.1
Vitamin B12 transporter.
    
 
 0.713
SHN36468.1
Outer membrane protein (porin).
  
  
  0.698
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.