STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN26085.1Outer membrane protein. (226 aa)    
Predicted Functional Partners:
SHM91304.1
Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.925
SHM91151.1
Cytochrome c oxidase cbb3-type subunit 2.
 
    0.905
SHM91184.1
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.890
SHM91060.1
Cytochrome c oxidase accessory protein FixG.
 
    0.841
SHM74723.1
Polyphosphate kinase 2, PA0141 family.
   
    0.820
SHM88446.1
Polyphosphate:nucleotide phosphotransferase, PPK2 family.
   
    0.820
SHM35051.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
   0.717
SHN26076.1
Hypothetical protein.
 
   
 0.685
SHM91089.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.616
SHM47725.1
Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.593
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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