Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN05274.1 | SHN26447.1 | SAMN05192549_10466 | SAMN05192549_106306 | sigma-E factor negative regulatory protein RseA. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.930 |
SHN17295.1 | SHN26447.1 | SAMN05192549_105140 | SAMN05192549_106306 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.780 |
SHN26447.1 | SHN05274.1 | SAMN05192549_106306 | SAMN05192549_10466 | RNA polymerase sigma-70 factor, ECF subfamily. | sigma-E factor negative regulatory protein RseA. | 0.930 |
SHN26447.1 | SHN17295.1 | SAMN05192549_106306 | SAMN05192549_105140 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.780 |
SHN26447.1 | SHN26456.1 | SAMN05192549_106306 | SAMN05192549_106307 | RNA polymerase sigma-70 factor, ECF subfamily. | Putative zinc-finger. | 0.841 |
SHN26447.1 | SHN26464.1 | SAMN05192549_106306 | SAMN05192549_106308 | RNA polymerase sigma-70 factor, ECF subfamily. | Subtilase family protein. | 0.859 |
SHN26447.1 | SHN26472.1 | SAMN05192549_106306 | SAMN05192549_106309 | RNA polymerase sigma-70 factor, ECF subfamily. | Conserved hypothetical protein. | 0.773 |
SHN26447.1 | SHN32490.1 | SAMN05192549_106306 | SAMN05192549_107294 | RNA polymerase sigma-70 factor, ECF subfamily. | Transmembrane transcriptional regulator (anti-sigma factor RsiW). | 0.780 |
SHN26447.1 | SHN36276.1 | SAMN05192549_106306 | SAMN05192549_108153 | RNA polymerase sigma-70 factor, ECF subfamily. | Transmembrane transcriptional regulator (anti-sigma factor RsiW). | 0.780 |
SHN26447.1 | rpoA | SAMN05192549_106306 | SAMN05192549_10835 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.759 |
SHN26447.1 | rpoB | SAMN05192549_106306 | SAMN05192549_1169 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.814 |
SHN26447.1 | rpoC | SAMN05192549_106306 | SAMN05192549_11610 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.829 |
SHN26456.1 | SHN26447.1 | SAMN05192549_106307 | SAMN05192549_106306 | Putative zinc-finger. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.841 |
SHN26456.1 | SHN26464.1 | SAMN05192549_106307 | SAMN05192549_106308 | Putative zinc-finger. | Subtilase family protein. | 0.923 |
SHN26456.1 | SHN26472.1 | SAMN05192549_106307 | SAMN05192549_106309 | Putative zinc-finger. | Conserved hypothetical protein. | 0.773 |
SHN26456.1 | SHN32490.1 | SAMN05192549_106307 | SAMN05192549_107294 | Putative zinc-finger. | Transmembrane transcriptional regulator (anti-sigma factor RsiW). | 0.438 |
SHN26464.1 | SHN26447.1 | SAMN05192549_106308 | SAMN05192549_106306 | Subtilase family protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.859 |
SHN26464.1 | SHN26456.1 | SAMN05192549_106308 | SAMN05192549_106307 | Subtilase family protein. | Putative zinc-finger. | 0.923 |
SHN26464.1 | SHN26472.1 | SAMN05192549_106308 | SAMN05192549_106309 | Subtilase family protein. | Conserved hypothetical protein. | 0.773 |
SHN26472.1 | SHN26447.1 | SAMN05192549_106309 | SAMN05192549_106306 | Conserved hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.773 |
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