STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN26916.1Hypothetical protein. (872 aa)    
Predicted Functional Partners:
SHN44111.1
Hypothetical protein.
 
  
  0.890
SHN36609.1
MSHA biogenesis protein MshQ.
 
  
 0.865
SHM88119.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
 
  
 0.856
SHN44159.1
Ig-like domain (group 3).
 
  
 0.837
SHN36357.1
Protein of unknown function.
 
  
 0.821
SHM69083.1
Metallo-peptidase family M12.
 
  
 0.812
SHN26499.1
PEP-CTERM protein-sorting domain-containing protein.
  
   
 0.811
SHN35532.1
Hypothetical protein.
 
  
 0.797
SHM98021.1
Hypothetical protein.
 
  
 0.792
SHN26927.1
Tetratricopeptide repeat-containing protein.
 
     0.785
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.