STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN27879.1AmpD protein. (198 aa)    
Predicted Functional Partners:
SHN27867.1
Two-component system, NtrC family, response regulator PilR.
       0.802
SHN27857.1
Two-component system, NtrC family, sensor histidine kinase PilS.
       0.769
SHN27836.1
ABC-type uncharacterized transport system, permease component.
       0.748
SHN27846.1
Uncharacterized protein.
       0.747
SHN27808.1
NitT/TauT family transport system substrate-binding protein.
       0.659
SHN27818.1
NitT/TauT family transport system permease protein.
       0.650
SHN27828.1
NitT/TauT family transport system ATP-binding protein.
       0.650
SHN23991.1
Hypothetical protein.
  
  
 0.620
SHM98918.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 0.577
SHN09806.1
murein-DD-endopeptidase. Serine peptidase. MEROPS family S11; Belongs to the peptidase S11 family.
  
  
 0.565
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.