STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN31166.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1220 aa)    
Predicted Functional Partners:
SHM67462.1
PAS domain S-box-containing protein.
  
0.999
SHM61944.1
Signal transduction histidine kinase.
  
0.999
SHM73600.1
PAS domain S-box-containing protein.
  
0.999
SHM73632.1
Signal transduction histidine kinase.
  
0.999
SHM73877.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.999
SHM75834.1
Signal transduction histidine kinase.
 
0.999
SHM90861.1
PAS domain S-box-containing protein.
  
0.999
SHN06823.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
0.999
SHN09668.1
Signal transduction histidine kinase.
  
0.999
SHN18243.1
GAF domain-containing protein.
  
 0.999
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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