STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN31784.1Arylsulfatase A. (471 aa)    
Predicted Functional Partners:
SHN26153.1
Uncharacterized protein.
 
 
 0.892
SHM96598.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
 
 
   0.866
SHN44775.1
Uncharacterized protein.
 
 
 0.847
SHN32401.1
Ergothioneine biosynthesis protein EgtB.
 
 
   0.816
SHN32359.1
Uncharacterized protein.
  
 
 0.815
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.809
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.800
SHN44771.1
HEXXH motif-containing protein.
  
 
 0.799
SHN40204.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
   
   0.793
SHN32315.1
Ergothioneine biosynthesis protein EgtB.
   
   0.790
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.