STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN39753.1Methionine aminotransferase. (392 aa)    
Predicted Functional Partners:
SHN38455.1
Chorismate mutase.
   
 0.820
SHN26283.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Belongs to the malic enzymes family.
  
 0.800
SHN32520.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 0.800
SHM93794.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.794
SHN43174.1
Cysteine sulfinate desulfinase/cysteine desulfurase.
 
 
 0.783
SHN13198.1
AMP-binding enzyme.
    
 0.782
SHN40837.1
Dihydrolipoamide dehydrogenase.
  
 0.780
SHM88060.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
   
 0.768
SHN40073.1
Cystathionine beta-synthase.
 
  
 0.762
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.746
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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