STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN39794.1MSHA biogenesis protein MshI. (314 aa)    
Predicted Functional Partners:
SHN39789.1
Hypothetical protein.
 
 0.998
SHN35504.1
Type IV pilus assembly protein PilN.
 
 0.979
SHN39772.1
MSHA biogenesis protein MshL.
 
  
 0.954
SHN39783.1
MSHA biogenesis protein MshJ.
 
   
 0.954
SHN39763.1
MSHA biogenesis protein MshN.
 
     0.945
SHN35513.1
Type IV pilus assembly protein PilO.
 
 
 0.925
SHN35519.1
Type IV pilus assembly protein PilP.
 
 
 0.911
SHN39799.1
MSHA biogenesis protein MshP.
 
   
 0.911
SHN39804.1
MSHA biogenesis protein MshO.
 
   
 0.901
SHN39809.1
MSHA pilin protein MshD.
 
   
 0.901
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.