STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN39514.1Lipase chaperone LimK. (309 aa)    
Predicted Functional Partners:
SHN39509.1
Triacylglycerol lipase.
 
 
 0.996
SHM26329.1
Hypothetical protein.
  
 
 0.898
SHN31148.1
Alpha/beta hydrolase fold.
  
 
 0.898
SHM45568.1
Hypothetical protein.
  
 
 0.895
SHN04614.1
Protein of unknown function.
  
     0.748
SHN15695.1
Long-chain fatty acid transport protein.
  
     0.708
SHN20742.1
Microbial collagenase.
  
     0.673
SHN15676.1
Hypothetical protein.
  
     0.672
SHN15734.1
Hypothetical protein.
  
     0.655
SHN42793.1
Leucyl aminopeptidase Metallo peptidase. MEROPS family M28E.
  
   
 0.610
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.