STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN42395.1Peptidylprolyl isomerase. (303 aa)    
Predicted Functional Partners:
SHM46588.1
ATP-dependent helicase HrpA.
   
 0.959
SHN44755.1
Signal transduction histidine kinase.
  
 0.954
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.952
SHM70506.1
Polyketide synthase PksJ.
  
 
 0.923
SHM78841.1
Amino acid adenylation domain-containing protein.
  
 
 0.923
SHN13198.1
AMP-binding enzyme.
  
 
 0.922
SHN44823.1
Hypothetical protein.
   
 0.916
SHN13175.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
 
 0.912
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.895
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.895
Your Current Organism:
Duganella sacchari
NCBI taxonomy Id: 551987
Other names: D. sacchari, Duganella sacchari Madhaiyan et al. 2013, Duganella sp. Sac-22, KCTC 22381, NCIMB 14475, strain Sac-22
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