Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM70506.1 | SHM78841.1 | SAMN05192549_102276 | SAMN05192549_102504 | Polyketide synthase PksJ. | Amino acid adenylation domain-containing protein. | 0.999 |
SHM70506.1 | SHN38163.1 | SAMN05192549_102276 | SAMN05192549_10967 | Polyketide synthase PksJ. | Hypothetical protein. | 0.754 |
SHM70506.1 | SHN38230.1 | SAMN05192549_102276 | SAMN05192549_10980 | Polyketide synthase PksJ. | Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.909 |
SHM70506.1 | SHN43510.1 | SAMN05192549_102276 | SAMN05192549_11743 | Polyketide synthase PksJ. | Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.909 |
SHM70506.1 | SHN44473.1 | SAMN05192549_102276 | SAMN05192549_12230 | Polyketide synthase PksJ. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.806 |
SHM70506.1 | infB | SAMN05192549_102276 | SAMN05192549_10591 | Polyketide synthase PksJ. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.814 |
SHM70506.1 | rpsQ | SAMN05192549_102276 | SAMN05192549_10817 | Polyketide synthase PksJ. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.936 |
SHM70506.1 | ybeY | SAMN05192549_102276 | SAMN05192549_11419 | Polyketide synthase PksJ. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.921 |
SHM75701.1 | SHN44473.1 | SAMN05192549_102423 | SAMN05192549_12230 | TspO and MBR related proteins. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.798 |
SHM78841.1 | SHM70506.1 | SAMN05192549_102504 | SAMN05192549_102276 | Amino acid adenylation domain-containing protein. | Polyketide synthase PksJ. | 0.999 |
SHM78841.1 | SHN38163.1 | SAMN05192549_102504 | SAMN05192549_10967 | Amino acid adenylation domain-containing protein. | Hypothetical protein. | 0.754 |
SHM78841.1 | SHN38230.1 | SAMN05192549_102504 | SAMN05192549_10980 | Amino acid adenylation domain-containing protein. | Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.909 |
SHM78841.1 | SHN43510.1 | SAMN05192549_102504 | SAMN05192549_11743 | Amino acid adenylation domain-containing protein. | Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.909 |
SHM78841.1 | SHN44473.1 | SAMN05192549_102504 | SAMN05192549_12230 | Amino acid adenylation domain-containing protein. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.806 |
SHM78841.1 | infB | SAMN05192549_102504 | SAMN05192549_10591 | Amino acid adenylation domain-containing protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.814 |
SHM78841.1 | rpsQ | SAMN05192549_102504 | SAMN05192549_10817 | Amino acid adenylation domain-containing protein. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.936 |
SHM78841.1 | ybeY | SAMN05192549_102504 | SAMN05192549_11419 | Amino acid adenylation domain-containing protein. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.921 |
SHN20822.1 | SHN44473.1 | SAMN05192549_105387 | SAMN05192549_12230 | B12 binding domain-containing protein. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.903 |
SHN38163.1 | SHM70506.1 | SAMN05192549_10967 | SAMN05192549_102276 | Hypothetical protein. | Polyketide synthase PksJ. | 0.754 |
SHN38163.1 | SHM78841.1 | SAMN05192549_10967 | SAMN05192549_102504 | Hypothetical protein. | Amino acid adenylation domain-containing protein. | 0.754 |
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