STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI51368.1Peptidyl-prolyl cis-trans isomerase D. (699 aa)    
Predicted Functional Partners:
surA
Periplasmic chaperone for outer membrane proteins SurA.
  
     0.669
bamA
Beta-barrel assembly machine subunit BamA.
  
 
 0.646
SDI51518.1
LPS export ABC transporter protein LptC.
 
     0.630
SDJ05908.1
Tetratricopeptide repeat-containing protein.
  
    0.621
ppiC
Peptidyl-prolyl cis-trans isomerase A (cyclophilin A).
   
 0.617
ppiA
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.617
ppiA-2
Peptidylprolyl isomerase.
   
 0.617
SDI51567.1
Long-chain fatty acid transport protein.
 
     0.609
SDI50632.1
Surface antigen.
  
 
 0.584
SDI51476.1
Hypothetical protein.
       0.577
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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