STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI51567.1Long-chain fatty acid transport protein. (416 aa)    
Predicted Functional Partners:
coaX
Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.805
SDI61996.1
Protein of unknown function.
 
     0.745
SDI79299.1
Hypothetical protein.
  
    0.730
SDK03583.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.729
SDI50632.1
Surface antigen.
  
   
 0.695
SDI51518.1
LPS export ABC transporter protein LptC.
 
     0.688
SDJ06232.1
Hypothetical protein.
  
     0.675
SDI51476.1
Hypothetical protein.
 
     0.664
SDI71119.1
Protein involved in gliding motility SprE.
  
     0.664
SDJ88419.1
Family of unknown function; Manually curated.
  
     0.647
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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