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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI51668.1Hypothetical protein. (790 aa)    
Predicted Functional Partners:
SDI51719.1
Carbohydrate binding domain-containing protein.
 
     0.775
SDI72841.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
  
     0.685
SDJ12932.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.684
SDJ64594.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
  
     0.684
SDJ64823.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.670
SDJ64790.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.635
SDJ12869.1
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.613
SDJ64668.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
  
     0.600
xynD
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
     0.548
SDJ12973.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
     0.540
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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