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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI53552.1Rhamnogalacturonan endolyase; Manually curated. (619 aa)    
Predicted Functional Partners:
SDI53863.1
Lysophospholipase L1.
  0.832
SDJ42139.1
Lysophospholipase L1.
  0.829
SDI53773.1
Lysophospholipase L1.
 
  0.815
rhgT
Lysophospholipase L1.
 
  0.783
SDI97754.1
Pectinesterase.
 
  0.759
SDI53414.1
Protein of unknown function, DUF608.
 
     0.722
SDI53506.1
Hypothetical protein.
 
  
  0.698
SDJ12869.1
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.636
SDI54259.1
alpha-L-rhamnosidase.
 
  0.616
SDJ33501.1
Oligogalacturonide lyase.
 
  
  0.610
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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