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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI54357.1Predicted transcriptional regulator. (123 aa)    
Predicted Functional Partners:
SDI54400.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.989
SDJ26788.1
BlaR1 peptidase M56.
 
 
 0.937
SDI90242.1
Cu2+-exporting ATPase.
  
  
 0.699
SDJ26746.1
Predicted transcriptional regulator.
  
  
 
0.697
SDI90152.1
Helix-turn-helix domain-containing protein.
  
  
 0.475
SDI89861.1
Copper chaperone CopZ.
  
  
 0.435
SDI54310.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.432
SDI58246.1
Hypothetical protein.
  
     0.413
SDI54565.1
Protein of unknown function.
 
     0.408
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.