STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI54718.1Uncharacterized conserved protein YgbK, DUF1537 family. (383 aa)    
Predicted Functional Partners:
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.956
SDI54682.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.858
SDI54802.1
4-hydroxy-tetrahydrodipicolinate synthase.
 
     0.829
SDI54839.1
Alcohol dehydrogenase, class IV.
 
     0.826
SDJ75428.1
Uncharacterized conserved protein YgbK, DUF1537 family.
  
     0.729
pdxA-2
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.712
SDJ75392.1
Asp/Glu/Hydantoin racemase.
 
     0.643
SDJ75462.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
     0.518
SDI54876.1
Transcriptional regulator, LacI family.
       0.516
SDI92399.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.481
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.