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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI54876.1Transcriptional regulator, LacI family. (345 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase (NADH) large subunit.
    
 
 0.820
SDI54839.1
Alcohol dehydrogenase, class IV.
       0.523
SDI54916.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.520
SDI54967.1
Acetyltransferase (GNAT) domain-containing protein.
       0.520
SDI55007.1
Kynurenine formamidase.
       0.520
SDI54718.1
Uncharacterized conserved protein YgbK, DUF1537 family.
       0.516
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.516
SDI54802.1
4-hydroxy-tetrahydrodipicolinate synthase.
       0.516
SDI54682.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.509
SDI54643.1
PH domain-containing protein.
   
   0.468
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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